PyMedExt - a library to process clinical text

PyMedExt is a library designed to process clinical text. PyMedExt includes basic data wrangling functions to transform text input formated as txt, pymedext,biocxml,biocjson,fhir, or brat into pymedext, biocxml, biocjson, omop or brat.

PyMedExt also includes an easy way to define Annotator.

Contents:

• PyMedExt - a library to process clinical text
  • Requirements
• Tutorials
  • Clone the repository for demo
  • Load a file as a PyMedExt Document
  • Add an Annotator
  • Export PyMedExt Document as a Brat file
  • PyMedExt commandline (in progress)
• Automatic PyMedExt Documentation from sources
• Examples
  • Datasets
• How to use
  • Makefile
  • interactive
• ROADMAP
  • TODO
  • RELEASED
• REFERENCES
  • BIOC
  • FHIR
  • BRAT format

Indices and tables

• Index

• Module Index

• Search Page